Environmental Dataset

NCBI

Data Filtering

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BIOPROJECT SRR Protocol/ Seceencing Instrument State Sub Category Hypervariable Region DOI
PRJNA388130 SRR5613218 NextSeq 500 Ladakh Soil Shotgun Sequencing https://doi.org/10.1016/j.scitotenv.2020.139074
PRJNA523689 SRR8610521 Illumina Genome Analyzer Jammu and Kashmir Water V3-V4 https://doi.org/10.1371/journal.pone.0248116
PRJNA523689 SRR8610522 Illumina Genome Analyzer Jammu and Kashmir Water V3-V4 https://doi.org/10.1371/journal.pone.0248116
PRJNA523689 SRR8610523 Illumina Genome Analyzer Jammu and Kashmir Water V3-V4 https://doi.org/10.1371/journal.pone.0248116
PRJNA523689 SRR8610524 Illumina Genome Analyzer Jammu and Kashmir Water V3-V4 https://doi.org/10.1371/journal.pone.0248116
PRJNA260660 SRR1578058 454 GS FLX Titanium Ladakh Soil ITS https://doi.org/10.1007/s00792-020-01191-z
PRJNA260660 SRR1574779 454 GS FLX Titanium Ladakh Soil ITS https://doi.org/10.1007/s00792-020-01191-z
PRJEB5191 ERR406965 454 GS FLX Titanium Ladakh Soil V1-V3 https://doi.org/10.1007/s00203-015-1121-4
PRJNA493696 SRR7939967 Illumina HiSeq 2500 Sikkim Water Shotgun Sequencing https://doi.org/10.1007/s00203-021-02278-7
PRJNA493696 SRR7939968 Illumina HiSeq 2500 Sikkim Soil Shotgun Sequencing https://doi.org/10.1007/s00203-021-02278-7
PRJNA454365 SRR7086598 Illumina MiSeq Sikkim Water V3-V4 https://doi.org/10.1101/320275
PRJNA454365 SRR7086599 Illumina MiSeq Sikkim Water V3-V4 https://doi.org/10.1101/320275
PRJNA454365 SRR7086600 Illumina MiSeq Sikkim Water V3-V4 https://doi.org/10.1101/320275
PRJNA454365 SRR7086601 Illumina MiSeq Sikkim Water V3-V4 https://doi.org/10.1101/320275
PRJNA647427 SRR12274736 Illumina HiSeq 2500 Uttarakhand Water Shotgun Sequencing https://doi.org/10.21203/rs.3.rs-107257/v1
PRJNA647427 SRR12274737 Illumina HiSeq 2500 Uttarakhand Water Shotgun Sequencing https://doi.org/10.21203/rs.3.rs-107257/v1
PRJNA647427 SRR12274738 Illumina HiSeq 2500 Uttarakhand Water Shotgun Sequencing https://doi.org/10.21203/rs.3.rs-107257/v1
PRJNA647427 SRR12274739 Illumina HiSeq 2500 Uttarakhand Water Shotgun Sequencing https://doi.org/10.21203/rs.3.rs-107257/v1
PRJNA647427 SRR12274740 Illumina HiSeq 2500 Uttarakhand Water Shotgun Sequencing https://doi.org/10.21203/rs.3.rs-107257/v1
PRJNA503778 SRR8208864 Illumina MiSeq Uttarakhand Soil V3 https://doi.org/10.1371/journal.pone.0213844
PRJNA544901 SRR9162133 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162134 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162135 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162136 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162137 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162138 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162139 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162140 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162141 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162142 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162143 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162144 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162145 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162146 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162147 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162148 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162149 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162150 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162151 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162152 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162153 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162154 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162155 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162156 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162157 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162158 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162159 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162160 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162161 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162162 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162163 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162164 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162165 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162166 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162167 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA544901 SRR9162168 Illumina MiSeq Meghalaya Soil V3-V4 https://doi.org/10.3389/fmicb.2020.00968
PRJNA390641 SRR5713534 Illumina MiSeq Uttarakhand Water V4 https://doi.org/10.1007/s00284-017-1352-5
PRJNA390641 SRR5713533 Illumina MiSeq Uttarakhand Water V4 https://doi.org/10.1007/s00284-017-1352-5
PRJNA634594 SRR11835575 Illumina HiSeq 2500 Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.rhisph.2020.100295
PRJNA634595 SRR11837129 Illumina HiSeq 2500 Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.rhisph.2020.100295
PRJNA634596 SRR11836725 Illumina HiSeq 2500 Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.rhisph.2020.100295
PRJNA496310 SRR8058208 Illumina HiSeq 3000 Ladakh Water V3-V4 https://doi.org/10.1007/s00284-020-02244-4
PRJNA496310 SRR8058209 Illumina HiSeq 3000 Ladakh Soil V3-V4 https://doi.org/10.1007/s00284-020-02244-4
PRJNA496310 SRR8058210 Illumina HiSeq 3000 Ladakh Soil V3-V4 https://doi.org/10.1007/s00284-020-02244-4
PRJNA496310 SRR8058211 Illumina HiSeq 3000 Ladakh Microbial Mats V3-V4 https://doi.org/10.1007/s00284-020-02244-4
PRJNA496310 SRR8058212 Illumina HiSeq 3000 Ladakh Microbial Mats V3-V4 https://doi.org/10.1007/s00284-020-02244-4
PRJNA496310 SRR8058213 Illumina HiSeq 3000 Ladakh Microbial Mats V3-V4 https://doi.org/10.1007/s00284-020-02244-4
PRJNA512265 SRR8381943 Ion Torrent PGM Ladakh Water Shotgun Sequencing http://doi.org/10.22438/jeb/41/4/MRN-1331
PRJNA551930 SRR9618230 Illumina HiSeq 2500 Ladakh Water Shotgun Sequencing http://doi.org/10.22438/jeb/41/4/MRN-1331
PRJNA741363 SRR14921307 MinION Himachal Pradesh Soil Shotgun Sequencing Not yet reported
PRJNA741363 SRR14921308 MinION Himachal Pradesh Soil Shotgun Sequencing Not yet reported
PRJNA513945 SRR8423784 Ion Torrent PGM Ladakh Water Shotgun Sequencing Not yet reported
PRJNA263989 SRR1980590 Illumina MiSeq Arunachal Pradesh Soil V3 Not yet reported
PRJNA263989 SRR1980589 Illumina MiSeq Arunachal Pradesh Soil V3 Not yet reported
PRJNA263989 SRR1980587 Illumina MiSeq Arunachal Pradesh Soil V3 Not yet reported
PRJNA263989 SRR1615114 Illumina MiSeq Arunachal Pradesh Soil V3 Not yet reported
PRJNA263989 SRR1615112 Illumina MiSeq Arunachal Pradesh Soil V3 Not yet reported
PRJNA263989 SRR1615111 Illumina MiSeq Arunachal Pradesh Soil V3 Not yet reported
PRJNA263989 SRR1980586 Illumina MiSeq Arunachal Pradesh Soil V3 Not yet reported
PRJNA263989 SRR1980585 Illumina MiSeq Arunachal Pradesh Soil V3 Not yet reported
PRJNA263989 SRR1980584 Illumina MiSeq Arunachal Pradesh Soil V3 Not yet reported
PRJNA263989 SRR1980582 Illumina MiSeq Arunachal Pradesh Soil V3 Not yet reported
PRJNA263989 SRR1615113 Illumina MiSeq Arunachal Pradesh Soil V3 Not yet reported
PRJNA263989 SRR1980583 Illumina MiSeq Arunachal Pradesh Soil V3 Not yet reported
PRJNA263989 SRR1615110 Illumina MiSeq Arunachal Pradesh Soil V3 Not yet reported
PRJNA263989 SRR1980581 Illumina MiSeq Arunachal Pradesh Soil V3 Not yet reported
PRJNA486366 SRR7703399 Illumina MiSeq Ladakh Soil V3-V4 https://doi.org/10.1128/MRA.01192-18
PRJNA705032 SRR13787070 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787071 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787072 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787073 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787074 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787075 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787076 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787077 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787078 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787079 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787080 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787081 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787082 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787083 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787084 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787085 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787086 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787087 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787088 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787089 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787090 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787091 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787092 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787093 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787094 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787095 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787096 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787097 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787098 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787099 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787100 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787101 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787102 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787103 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787104 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787105 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787106 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787107 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787108 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787109 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787110 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787111 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787112 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRX10172171 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787114 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787115 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787116 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787117 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787118 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787119 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787120 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787121 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787122 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787123 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787124 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787125 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787126 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787127 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787128 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306
PRJNA705032 SRR13787129 Illumina MiSeq Uttarakhand Soil V3-V4 https://doi.org/10.1016/j.apsoil.2021.104306

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