Sikkim Dataset

NCBI

Data Filtering

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BIOPROJECT SRR Protocol/ Sequencing Instrument Category Sub Category Hypervariable Region DOI
PRJNA563887 SRR10067286 Illumina HiSeq 2500 Hotspring Water Shotgun Sequencing https://doi.org/10.1186/s12866-020-01923-3
PRJNA563887 SRR10067287 Illumina HiSeq 2500 Hotspring Water Shotgun Sequencing https://doi.org/10.1186/s12866-020-01923-3
PRJNA450505 SRR7015755 Illumina HiSeq 4000 Hotspring Water V3-V4 https://doi.org/10.1007/s10142-019-00723-x
PRJNA450510 SRR7015754 Illumina HiSeq 4000 Hotspring Water V3-V4 https://doi.org/10.1007/s10142-019-00723-x
PRJNA493696 SRR7939967 Illumina HiSeq 2500 Environmental Water Shotgun Sequencing https://doi.org/10.1007/s00203-021-02278-7
PRJNA493696 SRR7939968 Illumina HiSeq 2500 Environmental Soil Shotgun Sequencing https://doi.org/10.1007/s00203-021-02278-7
PRJNA438930 SRR6869415 HiSeq X Ten Glacier Ice Shotgun Sequencing https://doi.org/10.1007/s42398-019-00067-z
PRJNA454365 SRR7086598 Illumina MiSeq Environmental Water V3-V4 https://doi.org/10.1101/320275
PRJNA454365 SRR7086599 Illumina MiSeq Environmental Water V3-V4 https://doi.org/10.1101/320275
PRJNA454365 SRR7086600 Illumina MiSeq Environmental Water V3-V4 https://doi.org/10.1101/320275
PRJNA454365 SRR7086601 Illumina MiSeq Environmental Water V3-V4 https://doi.org/10.1101/320275
PRJNA283407 SRR2014930 Illumina MiSeq Hotspring Microbial Mats V4 https://doi.org/10.1186/s13568-016-0284-y
PRJNA283403 SRR2014862 Illumina MiSeq Hotspring Microbial Mats V4 https://doi.org/10.1186/s13568-016-0284-y
PRJNA485728 SRR7698540 Illumina HiSeq 4000 Hotspring Soil Amplicon-Based https://doi.org/10.1016/j.crmicr.2020.05.002
PRJNA485701 SRR7698584 Illumina HiSeq 4000 Hotspring Soil Amplicon-Based https://doi.org/10.1016/j.crmicr.2020.05.002
PRJNA610749 SRR11277836 Illumina MiSeq Food-Microbiome Kinema (fermented soyabean) V3-V4 https://doi.org/10.1016/j.foodres.2020.110055
PRJNA610749 SRR11277837 Illumina MiSeq Food-Microbiome Kinema (fermented soyabean) V3-V4 https://doi.org/10.1016/j.foodres.2020.110055
PRJNA611486 SRR11277729 Illumina MiSeq Food-Microbiome Kinema (fermented soyabean) ITS3-ITS4 https://doi.org/10.1016/j.foodres.2020.110055
PRJNA611486 SRR11277730 Illumina MiSeq Food-Microbiome Kinema (fermented soyabean) ITS3-ITS4 https://doi.org/10.1016/j.foodres.2020.110055
PRJNA529966 SRR8830666 Illumina HiSeq 2500 Food-Microbiome Kinema (fermented soyabean) Shotgun Sequencing https://doi.org/10.3389/fmicb.2019.01744
PRJNA529966 SRR8830667 Illumina HiSeq 2500 Food-Microbiome Kinema (fermented soyabean) Shotgun Sequencing https://doi.org/10.3389/fmicb.2019.01744
PRJNA529966 SRR8830669 Illumina HiSeq 2500 Food-Microbiome Kinema (fermented soyabean) Shotgun Sequencing https://doi.org/10.3389/fmicb.2019.01744
PRJNA657139 SRR12454507 Illumina MiSeq Hotspring Soil V3-V4 https://doi.org/10.21203/rs.3.rs-1002781/v1
PRJNA657122 SRR12454511 Illumina MiSeq Hotspring Soil V3-V4 https://doi.org/10.21203/rs.3.rs-1002781/v1
PRJNA657152 SRR13643292 Illumina MiSeq Hotspring Soil V3-V4 https://doi.org/10.21203/rs.3.rs-1002781/v1
PRJNA657147 SRR12454506 Illumina MiSeq Hotspring Soil V3-V4 https://doi.org/10.21203/rs.3.rs-1002781/v1
PRJNA657133 SRR12454508 Illumina MiSeq Hotspring Soil V3-V4 https://doi.org/10.21203/rs.3.rs-1002781/v1
PRJNA657154 SRR12454505 Illumina MiSeq Hotspring Soil V3-V4 https://doi.org/10.21203/rs.3.rs-1002781/v1
PRJNA600094 SRR10857170 Illumina MiSeq Food-Microbiome Sidra (Fermented fish) V3-V4 https://doi.org/10.1016/j.foodres.2020.109885
PRJNA600094 SRR10857171 Illumina MiSeq Food-Microbiome Sidra (Fermented fish) V3-V4 https://doi.org/10.1016/j.foodres.2020.109885
PRJNA600094 SRR10857172 Illumina MiSeq Food-Microbiome Sidra (Fermented fish) V3-V4 https://doi.org/10.1016/j.foodres.2020.109885
PRJNA600094 SRR10857173 Illumina MiSeq Food-Microbiome Sidra (Fermented fish) V3-V4 https://doi.org/10.1016/j.foodres.2020.109885
PRJNA600094 SRR10857174 Illumina MiSeq Food-Microbiome Sidra (Fermented fish) V3-V4 https://doi.org/10.1016/j.foodres.2020.109885
PRJNA600094 SRR10857175 Illumina MiSeq Food-Microbiome Sidra (Fermented fish) V3-V4 https://doi.org/10.1016/j.foodres.2020.109885
PRJNA600094 SRR10857176 Illumina MiSeq Food-Microbiome Sidra (Fermented fish) V3-V4 https://doi.org/10.1016/j.foodres.2020.109885
PRJNA600094 SRR10857177 Illumina MiSeq Food-Microbiome Sidra (Fermented fish) V3-V4 https://doi.org/10.1016/j.foodres.2020.109885
PRJNA600094 SRR10857178 Illumina MiSeq Food-Microbiome Sidra (Fermented fish) V3-V4 https://doi.org/10.1016/j.foodres.2020.109885
PRJNA555473 SRR9714957 Illumina MiSeq Food-Microbiome Pork kargyong (Meat product) V3-V4 https://doi.org/10.1016/j.foodres.2020.110002
PRJNA555473 SRR9714958 Illumina MiSeq Food-Microbiome Beef kargyong (Meat product) V3-V4 https://doi.org/10.1016/j.foodres.2020.110002
PRJNA555473 SRR9714959 Illumina MiSeq Food-Microbiome Khyopeh (Meat product) V3-V4 https://doi.org/10.1016/j.foodres.2020.110002
PRJNA555473 SRR9714960 Illumina MiSeq Food-Microbiome Yak satchu (Meat product) V3-V4 https://doi.org/10.1016/j.foodres.2020.110002
PRJNA439163 SRR6869414 HiSeq X Ten Glacier Ice Shotgun Sequencing https://doi.org/10.1016/j.ecoenv.2020.111037
PRJNA418908 SRR6302636 Illumina HiSeq 4000 Hotspring Water V3-V4 https://doi.org/10.1016/j.scitotenv.2018.05.037
PRJNA418905 SRR6303070 Illumina HiSeq 4000 Hotspring Water V3-V4 https://doi.org/10.1016/j.scitotenv.2018.05.037
PRJNA496391 SRR8057865 Illumina HiSeq 4000 Glacier Soil V3-V4 https://doi.org/10.1007/s00284-020-02259-x
PRJNA376467 SRR5310946 Illumina MiSeq Food-Microbiome Marcha (Alcoholic beverages) ITS1-ITS2 https://doi.org/10.1038/s41598-017-11609-y
PRJNA376467 SRR5279402 Illumina MiSeq Food-Microbiome Marcha (Alcoholic beverages) V4 https://doi.org/10.1038/s41598-017-11609-y
PRJNA529966 SRR8830668 Illumina HiSeq 2500 Food-Microbiome Kinema (fermented soyabean) Shotgun Sequencing https://doi.org/10.3389/fmicb.2019.01744
PRJNA695113 SRR13573809 MinION Food-Microbiome Kinema (fermented soyabean) Shotgun Sequencing https://doi.org/10.3389%2Ffmicb.2022.868383

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