| Module 2 | GO:0006350 | transcription | Transcriptional Regulation | Genes | 
      | Module 4 | GO:0045449 | regulation of transcription | Transcriptional Regulation | Genes | 
      | Module 7 | GO:0006468 | protein phosphorylation | Signal Transduction | Genes | 
      | Module 13 | GO:0045449 | regulation of transcription | Transcriptional Regulation | Genes | 
      | Module 14 | GO:0045449 | regulation of transcription | Transcriptional Regulation | Genes | 
      | Module 21 | GO:0006468 | protein phosphorylation | Signal Transduction | Genes | 
      | Module 24 | GO:0031497 | chromatin assembly factor | Defense Response | Genes | 
      | Module 26 | GO:0006352 | DNA-dependent transcription initiation | Transcriptional Regulation | Genes | 
      | Module 32 | GO:0010468 | regulation of gene expression | Transcriptional Regulation | Genes | 
      | Module 34 | GO:0045449 | regulation of transcription | Transcriptional Regulation | Genes | 
      | Module 36 | GO:0010468 | regulation of gene expression | Transcriptional Regulation | Genes | 
      | Module 50 | GO:0022403 | cell cycle phase | Growth and Development | Genes | 
      | Module 58 | GO:0006468 | protein phosphorylation | Signal Transduction | Genes | 
      | Module 68 | GO:0006396 | RNA processing | Transcriptional Regulation | Genes | 
      | Module 69 | GO:0030029 | actin cytoskeleton organization | Defense response | Genes | 
      | Module 71 | GO:0007264 | small GTPase mediated signal transduction | Signal Transduction | Genes | 
      | Module 72 | GO:0006355 | regulation of transcription DNA-dependent | Transcriptional Regulation | Genes | 
      | Module 79 | GO:0006350 | transcription DNA-dependent | Transcriptional Regulation | Genes | 
      | Module 80 | GO:0006468 | protein phosphorylation | Signal Transduction | Genes | 
      | Module 85 | GO:0009058 | biosynthetic process | Growth and Development | Genes | 
      | Module 86 | GO:0046488 | phosphatidylinositol metabolic process | Signal Transduction | Genes | 
      | Module 95 | GO:0006793 | phosphorus metabolic process | Growth and Development | Genes | 
      | Module 109 | GO:0016071 | mRNA metabolic process | Transcriptional Regulation | Genes | 
      | Module 116 | GO:0032012 | regulation of ARF protein signal transduction | Signal Transduction | Genes | 
      | Module 131 | GO:0043631 | RNA polyadenylation | Transcriptional Regulation | Genes | 
      | Module 172 | GO:0009081 | branched-chain amino acid metabolic process | Defense response | Genes | 
      | Module 174 | GO:0006168 | adenine salvage | Growth and Development | Genes | 
      | Module 191 | GO:0031326 | regulation of cellular biosynthetic process | Growth and Development | Genes | 
      | Module 201 | GO:0009058 | biosynthetic process | Growth and Development | Genes | 
      | Module 206 | GO:0007165 | signal transduction | Signal Transduction | Genes | 
      | Module 224 | GO:0045454 | cell redox homeostasis | Signal Transduction | Genes | 
      | Module 235 | GO:0009725 | response to Hormone stimulus | Hormone | Genes | 
      | Module 238 | GO:0010468 | regulation of gene expression | Transcriptional Regulation | Genes | 
      | Module 245 | GO:0006351 | transcription DNA-dependent | Transcriptional Regulation | Genes | 
      | Module 261 | GO:0016192 | vesicle-mediated transport | Defense Response | Genes | 
      | Module 289 | GO:0006914 | autophagy | Defense response | Genes | 
      | Module 290 | GO:0022403 | cell cycle phase | Growth and Development | Genes | 
      | Module 301 | GO:0006350 | transcription DNA-dependent | Transcriptional Regulation | Genes | 
      | Module 307 | GO:0006351 | transcription DNA-dependent | Transcriptional Regulation | Genes |